ChatSpatial

Overview

ChatSpatial is a Model Context Protocol server that brings schema-enforced spatial transcriptomics analysis to AI assistants. It provides 20 tools and 66 methods for computational biology and genomics work, letting Claude, Cursor, VS Code, and other MCP clients perform sophisticated bioinformatics analysis directly within your workflow.

The server runs locally on your machine via uvx chatspatial with no authentication required. It's built on the Python package chatspatial, released as v1.5.3 under the MIT license. Full source code is available at cafferychen777/ChatSpatial on GitHub, where the project has gathered 44 stars.

ChatSpatial sits in the AI & Agents category on mcp.site and works with MCP clients including Claude Desktop, Claude Code, Cursor, VS Code, Windsurf, and Zed. If you maintain this server, claim your listing to verify ownership and keep the information accurate.

Installation

// claude_desktop_config.json
{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}